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Mitochondrial Health and Chronic Illness: Why Your Energy Factories Matter

  • Writer: Dr. Todd Farney
    Dr. Todd Farney
  • May 27
  • 4 min read

When people think about health, they often focus on organs like the heart, brain, or digestive system. But deep inside every cell lies a smaller, vital structure called the mitochondrion—the powerhouse that keeps everything running.


Mitochondria produce the energy our bodies need to function. When they become dysfunctional, they can contribute to chronic illnesses like fatigue syndromes, autoimmune diseases, neurodegenerative disorders, and even metabolic problems.


Understanding the role of mitochondrial health in chronic illness can open new paths for improving energy, reducing symptoms, and promoting better overall well-being.


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What Are Mitochondria—and Why Are They Important?

Mitochondria are tiny structures inside cells that produce adenosine triphosphate (ATP), the molecule that stores and supplies energy for cellular activities.


Beyond energy production, mitochondria also help:

  • Regulate cellular metabolism

  • Manage oxidative stress and free radical damage.

  • Support immune function

  • Signals when cells need repair or recycling.


When mitochondrial function declines, cells may not get the energy they need, leading to widespread effects across many systems in the body.


How Mitochondrial Dysfunction Contributes to Chronic Illness

When mitochondria are damaged or not working efficiently, it may contribute to or worsen chronic health conditions.


Some connections include:

  • Chronic Fatigue Syndrome (CFS/ME): Poor energy production at the cellular level may contribute to the severe fatigue seen in CFS.

  • Autoimmune Conditions: Mitochondrial stress can trigger inflammatory responses, potentially influencing immune system imbalances.

  • Neurodegenerative Disorders: Conditions like Parkinson’s and Alzheimer’s disease have been linked to mitochondrial dysfunction and oxidative stress.

  • Metabolic Disorders: Impaired mitochondrial function may affect how the body handles blood sugar, fat storage, and energy metabolism.

  • Lyme Disease and Post-Viral Syndromes: Persistent infections and inflammation can stress mitochondria, impacting recovery and energy levels.


Signs That May Suggest Mitochondrial Stress

While testing is needed for a full assessment, common signs that may be linked to mitochondrial dysfunction include:


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  • Persistent fatigue not relieved by rest.

  • Muscle weakness or soreness

  • Brain fog or memory problems

  • Poor exercise tolerance

  • Mood disturbances (such as anxiety or depression)

  • Sensitivity to infections or slower recovery


Factors That May Contribute to Mitochondrial Damage

Several lifestyle and environmental factors can impair mitochondrial function over time:

  • Chronic stress and elevated cortisol

  • Environmental toxins (heavy metals, pesticides, air pollution)

  • Nutrient deficiencies (especially B vitamins, magnesium, CoQ10)

  • Inflammation and oxidative stress

  • Infections, including viral and bacterial illnesses

  • Poor diet, high in processed foods, and unhealthy fats


Protecting and nourishing your mitochondria may help support resilience, recovery, and better long-term health outcomes.


Ways to Support Mitochondrial Health

1. Nourish with Mitochondria-Supporting Foods

Focus on whole foods that are rich in antioxidants, healthy fats, and key nutrients:


Helpful Foods Include:

  • Leafy greens (spinach, kale, arugula)

  • Fatty fish (salmon, sardines) for omega-3s

  • Berries (blueberries, raspberries) for antioxidants

  • Nuts and seeds (walnuts, chia seeds)

  • Colorful vegetables (carrots, peppers, beets)


Key Nutrients for Mitochondrial Support:

  • Magnesium: Essential for energy production

  • B vitamins: Help mitochondria convert food into energy

  • Coenzyme Q10 (CoQ10): Supports electron transport and ATP production

  • Alpha-lipoic acid and carnitine: Involved in mitochondrial metabolism and repair


2. Manage Oxidative Stress

Oxidative stress can damage mitochondrial membranes and DNA. To help reduce this:

  • Eat a diet rich in antioxidants.

  • Limit exposure to environmental toxins.

  • Prioritize recovery after illness or injury.


3. Support Detoxification Pathways

Since toxins can impair mitochondria, it's important to help the body detoxify naturally:

  • Stay hydrated

  • Support liver function with foods like cruciferous vegetables (broccoli, cauliflower)

  • Use gentle detox practices, such as Epsom salt baths or sauna sessions.


4. Prioritize Restorative Sleep


Person peacefully sleeping under a green blanket with soft sunlight creating shadows, conveying a calm and restful mood.

Mitochondria recharge during deep sleep.

  • Aim for consistent, high-quality sleep (7–9 hours per night)

  • Maintain a regular sleep-wake cycle.

  • Create a calming bedtime routine to enhance recovery.



5. Incorporate Gentle, Consistent Movement

While overexertion can worsen mitochondrial stress, regular low-intensity movement can help stimulate mitochondrial biogenesis (creating new mitochondria).

  • Walking, stretching, tai chi, and yoga are beneficial choices.


Final Thoughts

Mitochondria are central to energy production, resilience, and health. When mitochondrial function falters, it may contribute to a wide range of chronic illnesses and symptoms.


By making mindful choices around nutrition, stress management, toxin reduction, and lifestyle habits, individuals can help support their mitochondrial health—and in doing so, promote greater energy, clarity, and overall well-being.


Interested in exploring how mitochondrial health may be affecting your wellness?


Book your appointment today for a personalized assessment and support plan.





🎥 Watch: Mitochondrial Dysfunction: The Hidden Root of Chronic Illness & Fatigue


Do you feel exhausted, foggy, or inflamed, despite normal lab results? It could be your mitochondria.


This video explores how mitochondrial dysfunction contributes to fatigue, brain fog, hormone imbalances, and chronic illness.


You’ll learn how modern stressors—from toxins to poor sleep—damage cellular energy production, and discover practical strategies to restore energy and resilience at the root level.




Disclaimer: This blog is provided for informational purposes only and is not intended as medical advice. The content shared here is meant to enhance your understanding of health-related topics, but it should not replace professional medical advice, diagnosis, or treatment. Always consult your healthcare provider or a qualified medical professional with any questions regarding a medical condition or health objectives. Reliance on any information this blog provides is solely at your own risk.

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